Prevalence and antibiotic resistance profiles of extended spectrum β-lactamase-producing Escherichia coli among paediatric patients with urinary tract infection in St. Patricks’ Hospital, Mile Four, Abakaliki, Ebonyi State, Nigeria

Iroha, I. R., Onyia, U., *Moses, I. B., Ejikeugwu, C. P., Nwakaeze, A. E., and Ugbo, E. N.
Department of Applied Microbiology, Faculty of Sciences, Ebonyi State University, Abakaliki, Nigeria *Correspondence to: ben_iyke70@yahoo.com

Abstract:
Background: The extended spectrum beta-lactamase (ESBL)-producing Escherichia coli strains which have been implicated in septicaemia among hospitalized children is a serious concern due to their high resistance rates to commonly used antimicrobial agents. The objective of this study was to determine the prevalence and antibiotic susceptibility of urinary ESBL-producing E. coli in paediatric patients who had clinical evidence of urinary tract infections (UTI). Methodology: Clean catch specimens of urine collected from 100 eligible paediatric patients with clinical evidence of UTI in St. Patricks’ Hospital, Mile Four, Abakaliki, Ebonyi State, were cultured for isolation of E. coli using standard bacteriological techniques. Isolates were confirmed for ESBL production by double disk synergy test (DDST), and antibiotic susceptibility of the ESBL-producing ones was determined by the modified Kirby Bauer disk diffusion method. Results: Twenty one (21%) E. coli were isolated out of which 11 (52 %) were ESBL producers, all of which were totally resistant (100%) to cefotaxime, ticarcillin and sulfamethoxazole-trimethoprim, 85% to aztreonam and 83% to ceftazidime. The multiple antibiotic resistance index (MARI) values ranged from 0.4 to 0.9, which implies high usage of antimicrobials Conclusion: The high prevalence of multi-drug resistant ESBL-producing E. coli obtained in this study shows that there has been overuse (abuse or misuse) of antibiotics in the study area. There is need for antimicrobial stewardship programme that will ensure prudent use of antimicrobial agents to forestall the emergence and spread of multi-drug resistant bacteria.

Keywords: Paediatrics, Escherichia coli, ESBL, urine, multi-drug resistance

Received February 8, 2019; Revised May 23, 2019; Accepted May 24, 2019
Copyright 2019 AJCEM Open Access. This article is licensed and distributed under the terms of the Creative Commons Attrition 4.0 International License (//creativecommmons.org/licenses/by/4.0), which permits unrestricted use, distribution and reproduction in any medium, provided credit is given to the original author(s) and the source.

Profils de prévalence et de résistance aux antibiotiques d’Escherichia coli produisant des β-lactamases à spectre étendu chez des patients pédiatriques présentant une infection des voies urinaires à l’hôpital St. Patricks, Mile Four, Abakaliki, État d’Ebonyi, Nigéria

Iroha, I. R., Onyia, U. * Moses, I. B., Ejikeugwu, C. P., Nwakaeze, A. E., et Ugbo, E. N.
Département de microbiologie appliquée, Faculté des sciences, Université d’Ebonyi, Abakaliki, Nigéria *Correspondance à: ben_iyke70@yahoo.com

Abstrait:
Contexte: Les souches d’Escherichia coli productrices de bêta-lactamase à spectre étendu (BLSE) qui ont été impliquées dans la septicémie chez les enfants hospitalisés constituent un grave problème en raison de leur taux de résistance élevé aux agents antimicrobiens couramment utilisés. L’objectif de cette étude était de déterminer la prévalence et la sensibilité aux antibiotiques d’E. coli producteurs de BLSE dans l’urine chez les patients pédiatriques présentant des signes cliniques d’infections des voies urinaires (UTI). Méthodologie: Des échantillons d’urine prélevés chez 100 patients pédiatriques éligibles présentant des signes cliniques d’UTI à l’hôpital St. Patricks, à Mile Four, à Abakaliki, dans l’État d’Ebonyi, ont été cultivés pour l’isolement de E. coli à l’aide de techniques bactériologiques classiques. Les isolats ont été confirmés pour la production de BLSE par un test de synergie à double disque (DDST) et la sensibilité aux antibiotiques des producteurs de BLSE a été déterminée par la méthode de diffusion sur disque de Kirby Bauer modifiée. Résultats: Vingt et un (21%) E. coli ont été isolés, dont 11 (52%) étaient des producteurs de BLSE, qui étaient tous totalement résistants (100%) au céfotaxime, à la ticarcilline et au sulfaméthoxazole-triméthoprime, 85% à l’aztréonam et au 83 % en ceftazidime. Les valeurs de l’indice de résistance multiple aux antibiotiques (MARI) allaient de 0,4 à 0,9, ce qui implique une utilisation élevée d’antimicrobiens Conclusion: La prévalence élevée d’E. coli productrice de BLSE résistante à plusieurs médicaments obtenue dans cette étude montre qu’il y a eu surutilisation (abus ou abus). ) d’antibiotiques dans la zone d’étude. Un programme de gestion des antimicrobiens est nécessaire pour garantir une utilisation prudente des agents antimicrobiens afin de prévenir l’émergence et la propagation de bactéries multirésistantes aux médicaments

Mots-clés: pédiatrie, Escherichia coli, BLSE, urine, multirésistance

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Prevalence and antibiotic resistance profiles of extended spectrum β-lactamase-producing Escherichia coli among paediatric patients with urinary tract infection in St. Patricks’ Hospital, Mile Four, Abakaliki, Ebonyi State, Nigeria

Antimicrobial susceptibility of extended-spectrum beta-lactamase producing Enterobacteriaceae causing urinary tract infections in Ouagadougou, Burkina Faso

D.S. Kpoda, N Guessennd, N.S. Somda, A Ajayi, J.I. Bonkoungou, F Konan, M.B. Ouattara, M Somda, J Simpore, R Ouedraogo, K.M. Drabo, L Sangare, M Dosso, A.S. Traore

 

Abstract

Objective: To determine the frequency of extended-spectrum beta lactamase producing Enterobacteriaceae (ESBL) and other antibioticsresistant bacteria in urinary tract isolates.

Study Design: prospective and experimental study.

Methodology: Place and duration of study :YalgadoOuedraogo University Hospital Center, Charles De Gaulle Pediatric Hospital Center, Saint Camille Hospital and National Public Health Laboratory, Ouagadougou, from November 2014 to October 2015.

AllEnterobacteriaceaestrains isolated from urinary samples of patients were identifiedusing API 20E chemical gallery (BioMerieux, France). All strains were subjected to an array of 14 antibiotics to study their drug susceptibility by using Kirby- Baeurdisk diffusion method. Detection of ESBL was carried out by double disk diffusion technique. Statistical analysis was performed by Microsoft Excel and Anova one-way GrapPad Prism version 5.01. Chi-square (χ2) test was used to determine significance. A p˂ 0.05was considered to be statistically significant.

Results: A total of 324 isolates of Enterobacteriaceae were identified during the study period, including211(65%) E. coli, 75 (23%)Klebsiellaspp., 18 (6%) Enterobacter spp., 11 (3%)Proteus spp., 5 (2%) Citrobacter spp., Serratia spp. 3 (1%).All the clinical isolates were susceptible to imipenem. Resistance to amikacinwas 14% (45/324); gentamicin 54% (175/324); tobramycin 58% (187/324); nalidixic acid 72% (234/324),ciprofloxacin 63% (204/324) and to cotrimoxazole 83% (269/324).The overall rate of the EBSL producing strains was 35% (114/324). Their susceptibility to antibiotics was (imipenem,amikacin, cefoxitin and fosfomycin) 100% (114/114), 93% (106/114), 74% (84/114) and 84% (96/114) respectively. ESBL positivity within individual organism group was highest inEscherichia coli 64% (73/324) followed byKlebsiellaspp. 28% (32/324), Enterobacterspp. 3% (4/324), Proteus spp. and Citrobacterspp. 2% (2/324).

Conclusion: The results showeda high frequency of ESBL producing Enterobacteriaceae, especially Escherichia coli and Klebsiellaspp. The data points to theneed of routine detection and surveillance of ESBL producing bacteria in Burkina Faso.

Keywords: Antimicrobial susceptibility, Enterobacteriaceae, Urine, Burkina Faso

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Antimicrobial susceptibility of extended-spectrum beta-lactamase producing Enterobacteriaceae causing urinary tract infections in Ouagadougou, Burkina Faso

Urine culture contamination: a one-year retrospective study at the national hospital, Abuja

KC Iregbu, N Medugu, N Abdullahi, AI Aigbe, IF Modibbo, PI Nwajiobi-Princewill, SA Shettima

 

Abstract

Background: Urine culture contamination is a significant cause of delay in treatment of patients being investigated for urinary tract
infection. Though contamination is not completely avoidable, several measures have been proven to decrease contamination rates.
There are few studies detailing urine contamination rates in laboratories in Nigeria.
Aim: To determine the frequency and factors associated with urine culture contamination in samples submitted to the Medical
Microbiology Laboratory in National Hospital Abuja (NHA).
Method: Retrospective study of urine culture contamination in which data from Medical Microbiology Laboratory from January 1 to
December 31 2012 at National Hospital Abuja were reviewed. Patients’ age, gender, location and urine culture result were assessed.
Contamination rates for different genders, age groups and departments were assessed and results presented in simple averages and
percentages.
Results: Overall contamination rate was 13.1%. Females had a contamination rate of 16.9%, which was significantly higher than the
contamination rate of 6.8% in males. The Gynaecology and Antenatal clinics had the highest contamination rates amongst departments
with 22.5% and 21.3% respectively. Lowest contamination rates were in Emergency Paediatric Unit (EPU) and intensive Care Unit (ICU)
with rates of 5.9%and 9.5% respectively. The female gender was found to be the most significant predictor of higher contamination rate.
Conclusion: Contamination rate of urine cultures in this study is unacceptably high. Appropriate interventions need to be instituted to
reduce the current urine culture contamination rate in National Hospital Abuja.

Key Words: Urine, Contamination, National Hospital, Abuja.

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Urine culture contamination a one-year retrospective study at the national hospital, abuja